PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g06970.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family SBP
Protein Properties Length: 123aa    MW: 13763.5 Da    PI: 9.7812
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g06970.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP91.21.1e-2846115278
                      -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
              SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                      Cq+++C ++l+ ak+y+rrhkvC+ hskapvvl+sg++qr       fhel efD++krsCr+ La+hnerrrk+++
  Vradi11g06970.1  46 CQADECGVNLNMAKSYNRRHKVCDRHSKAPVVLLSGIRQR-------FHELAEFDDTKRSCRKTLAEHNERRRKSRT 115
                      **************************************97.......7**************************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.108.1E-2238100IPR004333Transcription factor, SBP-box
PROSITE profilePS5114122.01643113IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.75E-2845117IPR004333Transcription factor, SBP-box
PfamPF031101.3E-2146112IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MDNGNEKDER ETVKEGEMVK KITITLVCGN GKGSRRGSSS SSSSFCQADE CGVNLNMAKS  60
YNRRHKVCDR HSKAPVVLLS GIRQRFHELA EFDDTKRSCR KTLAEHNERR RKSRTDMSLG  120
GE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-2238112384squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-102AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014519658.15e-72PREDICTED: squamosa promoter-binding-like protein 3
SwissprotQ6Z4612e-28SPL13_ORYSJ; Squamosa promoter-binding-like protein 13
TrEMBLV7CKU02e-51V7CKU0_PHAVU; Uncharacterized protein
STRINGGLYMA11G08905.12e-45(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53534153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.12e-25squamosa promoter binding protein-like 3